Basic Information
Locus ID:
nbisL1-mrna-11389
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002122F_pilon | 2787325 | 2795327 | - | nbisL1-mrna-11389 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 91,288.21 Da | 40.12 | 89.15 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 325 | 765 | 9.6E-46 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 38 | 142 | 1.7E-24 | IPR006615 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 323 | 802 | 1.37E-58 | IPR038765 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 160 | 236 | 2.34E-5 | IPR029071 |
| SUPERFAMILY | SSF143791 | DUSP-like | 16 | 142 | 1.23E-27 | IPR035927 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 316 | 556 | 1.2E-67 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 8 | 155 | 1.1E-36 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 156 | 242 | 3.0E-13 | - |
| SMART | SM00695 | dusp | 34 | 145 | 2.4E-30 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 15 | 142 | 18.296999 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 325 | 746 | 27.97229 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 326 | 341 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_021683725.1 | ubiquitin carboxyl-terminal hydrolase 5-like isoform X1 [Hevea brasiliensis] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2LYF9 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology