halophFGD

Basic Information

Locus ID: nbisL1-mrna-11388

Species & Taxonomic ID: Rhizophora mangle & 40031

Genome Assembly: GCA_037832345.1

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
002122F_pilon	2781180	2783278	-	nbisL1-mrna-11388

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.99	18,233.67 Da	46.62	67.19	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF57850	RING/U-box	80	129	8.39E-8	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	78	163	1.1E-7	IPR013083

KEGG Pathway

KO Term:

K11968 (ariadne-1 [EC:2.3.2.31])

Best hit

Source	Best Hit ID	Description
TAIR	AT1G65430.1	IBR domain-containing protein.
RefSeq	XP_011017274.1	PREDICTED: probable E3 ubiquitin-protein ligase ARI8 [Populus euphratica]
Swiss-Prot	Q8W468	Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1
TrEMBL	A0A2P2NHI9	RBR-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg10971, jg14653, jg5913
Aizoaceae	Mesembryanthemum crystallinum	8	gene_10143, gene_19392, gene_2222, gene_2904, gene_2905 ... gene_3181, gene_3182, gene_3183
Amaranthaceae	Atriplex hortensis	7	Ah000345, Ah000348, Ah008011, Ah018958, Ah018959, Ah019341 ... Ah022503
Amaranthaceae	Beta vulgaris	3	BVRB_3g054880, BVRB_4g074750, BVRB_5g119640
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg15249, Sbi_jg15522, Sbi_jg17415, Sbi_jg56061 ... Sbi_jg62064
Amaranthaceae	Salicornia europaea	3	Seu_jg26546, Seu_jg26791, Seu_jg676
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00004951, GOSA_00004952, GOSA_00006296, GOSA_00006584 ... GOSA_00007560
Amaranthaceae	Suaeda glauca	8	Sgl01713, Sgl02044, Sgl02045, Sgl06867, Sgl07198, Sgl07199 ... Sgl24261, Sgl29436
Amaranthaceae	Chenopodium album	15	gene:ENSEOMG00000003098, gene:ENSEOMG00000004108 ... gene:ENSEOMG00000006541, gene:ENSEOMG00000011635, gene:ENSEOMG00000011688, gene:ENSEOMG00000014193, gene:ENSEOMG00000021251, gene:ENSEOMG00000024753, gene:ENSEOMG00000027283, gene:ENSEOMG00000028844, gene:ENSEOMG00000030735, gene:ENSEOMG00000042603, gene:ENSEOMG00000043076, gene:ENSEOMG00000043537, gene:ENSEOMG00000044964
Amaranthaceae	Chenopodium quinoa	13	CQ.Regalona.r1.3AG0002360, CQ.Regalona.r1.3AG0002370 ... CQ.Regalona.r1.3AG0009570, CQ.Regalona.r1.3BG0002510, CQ.Regalona.r1.3BG0009730, CQ.Regalona.r1.4AG0003030, CQ.Regalona.r1.4BG0003180, CQ.Regalona.r1.5AG0025060, CQ.Regalona.r1.5AG0025070, CQ.Regalona.r1.5BG0026510, CQ.Regalona.r1.5BG0026520, CQ.Regalona.r1.6AG0011570, CQ.Regalona.r1.8AG0012250
Anacardiaceae	Pistacia vera	2	pistato.v30095640, pistato.v30243700
Apiaceae	Apium graveolens	4	Ag1G00025, Ag3G01129, Ag5G00927, Ag7G02495
Arecaceae	Cocos nucifera	3	COCNU_01G015350, COCNU_02G012690, scaffold015887G000050
Arecaceae	Phoenix dactylifera	3	gene-LOC103708603, gene-LOC103716244, gene-LOC103724095
Asparagaceae	Asparagus officinalis	5	AsparagusV1_01.1335.V1.1, AsparagusV1_01.3623.V1.1 ... AsparagusV1_02.475.V1.1, AsparagusV1_04.1972.V1.1, AsparagusV1_09.588.V1.1
Asteraceae	Flaveria trinervia	5	Ftri11G24005, Ftri12G27530, Ftri18G01154, Ftri18G19073 ... Ftri1G00637
Brassicaceae	Arabidopsis thaliana	7	AT1G05880.2, AT1G05890.2, AT1G65430.1, AT2G31510.1 ... AT2G31760.1, AT2G31770.1, AT2G31780.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10007273m.g.v1.0, Thhalv10009394m.g.v1.0 ... Thhalv10015682m.g.v1.0, Thhalv10016456m.g.v1.0, Thhalv10017564m.g.v1.0, Thhalv10018351m.g.v1.0
Brassicaceae	Schrenkiella parvula	7	Sp1g04710.v2.2, Sp1g04720.v2.2, Sp4g13970.v2.2 ... Sp4g14160.v2.2, Sp5g20190.v2.2, Sp6g31880.v2.2, Sp7g00980.v2.2
Brassicaceae	Brassica nigra	12	BniB01g012370.2N, BniB01g012380.2N, BniB01g012640.2N ... BniB03g001580.2N, BniB05g025870.2N, BniB05g061500.2N, BniB06g020580.2N, BniB06g020820.2N, BniB06g044620.2N, BniB08g005350.2N, BniB08g019560.2N, BniB08g019800.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G1429, Ceq06G2261
Casuarinaceae	Casuarina glauca	2	Cgl04G1592, Cgl06G2372
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g02280, gene.Cymno05g02420
Dunaliellaceae	Dunaliella salina	1	Dusal.0235s00013.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g21200
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-11998
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.1628, evm.TU.LG11.149
Plantaginaceae	Plantago ovata	6	Pov_00021409, Pov_00029535, Pov_00038885, Pov_00039569 ... Pov_00039570, Pov_00039574
Plumbaginaceae	Limonium bicolor	4	Lb3G15885, Lb4G25112, Lb4G25115, Lb7G33509
Poaceae	Echinochloa crus-galli	14	AH01.4387, AH03.1232, AH04.2135, AH04.2137, AH08.2241 ... AH09.1004, AH09.1399, BH04.2225, BH04.2226, BH08.2371, BH09.1584, CH04.2564, CH08.2547, CH09.1704
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_4AG0312580, gene-QOZ80_4BG0343750 ... gene-QOZ80_6AG0526260, gene-QOZ80_6BG0480180, gene-QOZ80_8AG0638200, gene-QOZ80_8BG0667720
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.2HG0177810.1, HORVU.MOREX.r3.5HG0495770.1 ... HORVU.MOREX.r3.5HG0505350.1.CDS1, HORVU.MOREX.r3.5HG0506120.1.CDS1, HORVU.MOREX.r3.6HG0592780.1, HORVU.MOREX.r3.7HG0686010.1
Poaceae	Lolium multiflorum	6	gene-QYE76_006616, gene-QYE76_007060, gene-QYE76_023529 ... gene-QYE76_030416, gene-QYE76_044840, gene-QYE76_049610
Poaceae	Oryza coarctata	8	Oco02G028150, Oco07G009400, Oco08G009250, Oco15G013690 ... Oco16G012870, Oco17G009270, Oco17G011730, Oco18G011640
Poaceae	Oryza sativa	5	LOC_Os01g37970.1, LOC_Os04g41470.1, LOC_Os08g42740.3 ... LOC_Os09g33876.1, LOC_Os09g38630.1
Poaceae	Paspalum vaginatum	7	gene-BS78_02G271100, gene-BS78_05G235300, gene-BS78_K261000 ... gene-BS78_05G236100, gene-BS78_05G236400, gene-BS78_06G144200, gene-BS78_07G210500
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0105319, Pt_Chr0204522, Pt_Chr0204582, Pt_Chr0307171 ... Pt_Chr0403527, Pt_Chr0700145, Pt_Chr0700326
Poaceae	Sporobolus alterniflorus	13	Chr06G002260, Chr11G013140, Chr14G002760, Chr16G018400 ... Chr17G017540, Chr20G002410, Chr21G001930, Chr23G009920, Chr25G009690, Chr26G009830, Chr29G001070, Chr30G009550, Chr30G013930
Poaceae	Thinopyrum elongatum	5	Tel2E01G607700, Tel5E01G475300, Tel5E01G577600 ... Tel6E01G417600, Tel7E01G466200
Poaceae	Triticum dicoccoides	13	gene_TRIDC2AG050640, gene_TRIDC2BG028800 ... gene_TRIDC2BG053830, gene_TRIDC5AG044580, gene_TRIDC5AG052890, gene_TRIDC5BG048430, gene_TRIDC5BG057020, gene_TRIDC6AG033590, gene_TRIDC6BG039830, gene_TRIDC6BG071330, gene_TRIDC6BG071340, gene_TRIDC7AG034970, gene_TRIDC7BG026060
Poaceae	Triticum aestivum	18	TraesCS2A02G349600.1, TraesCS2B02G368000.2 ... TraesCS2D02G348000.2, TraesCS5A02G298200.1, TraesCS5A02G361400.1.cds1, TraesCS5B02G297300.1, TraesCS5B02G364000.1.cds1, TraesCS5D02G305000.1, TraesCS5D02G370300.1.cds1, TraesCS6A02G216900.1, TraesCS6A02G417200.1.cds1, TraesCS6B02G245900.2, TraesCS6B02G472300.1.cds1, TraesCS6D02G198600.5, TraesCS6D02G402400.1.cds1, TraesCS7A02G267200.4, TraesCS7B02G165100.2, TraesCS7D02G267600.2
Poaceae	Zea mays	6	Zm00001eb037260_P005, Zm00001eb078850_P001 ... Zm00001eb115900_P002, Zm00001eb165360_P001, Zm00001eb198350_P001, Zm00001eb425570_P004
Poaceae	Zoysia japonica	4	nbis-gene-17564, nbis-gene-36952, nbis-gene-42758 ... nbis-gene-5122
Poaceae	Zoysia macrostachya	4	Zma_g19963, Zma_g21515, Zma_g23356, Zma_g24463
Portulacaceae	Portulaca oleracea	5	evm.TU.LG07.1492, evm.TU.LG11.1274, evm.TU.LG11.1591 ... evm.TU.LG18.1616, evm.TU.LG20.259
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g05280
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.1513 ... evm.TU.Scaffold_12_RagTag.490, evm.TU.Scaffold_6_RagTag.1076, evm.TU.Scaffold_8_RagTag.1050
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-12804, nbisL1-mrna-15579, nbisL1-mrna-24253 ... nbisL1-mrna-8980, nbisL1-mrna-8983
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-16588, nbisL1-mrna-20493, nbisL1-mrna-6027 ... nbisL1-mrna-7428
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15412, nbisL1-mrna-22517, nbisL1-mrna-930
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000018l.140, add.evm.TU.utg000018l.141 ... add.evm.TU.utg000027l.125, evm.TU.utg000010l.460, evm.TU.utg000011l.685
Rhizophoraceae	Kandelia obovata	3	Maker00003239, Maker00007836, Maker00008651
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1172, nbisL1-mrna-13614, nbisL1-mrna-19013
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-11388, nbisL1-mrna-11970, nbisL1-mrna-20469 ... nbisL1-mrna-24087, nbisL1-mrna-4169
Salicaceae	Populus euphratica	5	populus_peu06631, populus_peu20515, populus_peu24042 ... populus_peu31934, populus_peu31935
Solanaceae	Lycium barbarum	2	gene-LOC132603247, gene-LOC132615598
Solanaceae	Solanum chilense	2	SOLCI000301500, SOLCI003011700
Solanaceae	Solanum pennellii	2	gene-LOC107004635, gene-LOC107023621
Tamaricaceae	Reaumuria soongarica	3	STRG.10388_chr07_-, STRG.28039_chr04_+, gene_4243
Tamaricaceae	Tamarix chinensis	3	TC02G1580, TC02G3019, TC06G1399
Zosteraceae	Zostera marina	1	Zosma03g21870.v3.1