Basic Information
Locus ID:
nbisL1-mrna-11371
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 15877974 | 15879887 | - | nbisL1-mrna-11371 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 70,203.47 Da | 48.23 | 70.28 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 452 | 528 | 2.29556E-46 | - |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 79 | 259 | 3.0E-54 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 459 | 504 | 1.5E-10 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 458 | 526 | 8.24E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 447 | 534 | 3.1E-17 | IPR036638 |
| SMART | SM00353 | finulus | 461 | 510 | 4.6E-16 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 455 | 504 | 17.25024 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 465 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 465 | - | - |
| Coils | Coil | Coil | 501 | 528 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32640.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. | 0 |
| RefSeq | XP_039026465.1 | transcription factor MYC2-like [Hibiscus syriacus] | 0 |
| A0A3Q7HRZ6 | Transcription factor MYC2 OS=Solanum lycopersicum OX=4081 GN=MYC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3CTQ7 | Transcription factor MYC2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002847pilonHSYRG00023 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology