Basic Information
Locus ID:
nbisL1-mrna-11276
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 15146816 | 15150519 | + | nbisL1-mrna-11276 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 40,444.11 Da | 51.10 | 88.74 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 307 | 350 | 8.2E-9 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 30 | 89 | 1.1E-16 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 308 | 353 | 3.06E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 265 | 355 | 4.3E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 309 | 350 | 0.0024 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 309 | 350 | 10.836942 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017635564.1 | PREDICTED: RING-H2 finger protein ATL22-like [Gossypium arboreum] | 0 |
| Q84W40 | RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A2Y288 | Mitochondrial inner membrane protein OXA1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00113721pilonHSYRG00188 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology