Basic Information
Locus ID:
nbisL1-mrna-11253
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Short Name:
MURE
Description:
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 14908525 | 14909341 | - | nbisL1-mrna-11253 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 16,127.24 Da | 22.38 | 94.87 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01225 | Mur ligase family, catalytic domain | 21 | 92 | 2.9E-6 | IPR000713 |
| SUPERFAMILY | SSF63418 | MurE/MurF N-terminal domain | 20 | 95 | 2.49E-16 | IPR035911 |
| SUPERFAMILY | SSF53623 | MurD-like peptide ligases, catalytic domain | 75 | 140 | 1.31E-10 | IPR036565 |
| Gene3D | G3DSA:3.40.1390.10 | - | 8 | 94 | 1.1E-16 | - |
| Gene3D | G3DSA:3.40.1190.10 | - | 95 | 150 | 6.0E-6 | IPR036565 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63680.1 | acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases. Encodes AtMurE, a homolog of the bacterial MurE that catalyze the ATP-dependent formation of UDP-N-acetylmuramic acid-tripeptide in bacterial peptidoglycan biosynthesis. Localized to plastids. AtMurE is involved in chloroplast biogenesis. | 0 |
| RefSeq | XP_039022727.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE homolog, chloroplastic-like [Hibiscus syriacus] | 0 |
| F4I3P9 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MURE PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2WQ80 | Acid-amino acid ligase, isoform 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00113721pilonHSYRG00117 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7624 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1824 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026559 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g137540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14744, Sbi_jg55521 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26072 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023100 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34767, Sgl40137 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000736, gene:ENSEOMG00000005264 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0017820, CQ.Regalona.r1.6BG0018910 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30104760, pistato.v30135950 |
| Apiaceae | Apium graveolens | 1 | Ag9G02796 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G011720, COCNU_08G010400, COCNU_10G008540 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695983, gene-LOC103717440, gene-LOC120104388 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_07.2213.V1.1, AsparagusV1_07.2214.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G33313 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G63680.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023292m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g00970.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g024040.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0306 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0385 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g03740 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0408s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g10940 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11251, nbisL1-mrna-11253 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1418 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003200 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09280 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3002, BH01.3335, CH01.3581 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0115790, gene-QOZ80_2BG0169660 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0055820.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012479 |
| Poaceae | Oryza coarctata | 2 | Oco19G009560, Oco20G009430 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g40130.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G293900 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0503120, Pt_Chr0503148, Pt_Chr0503160, Pt_Chr0701884 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G004440, Chr13G020480 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G357900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG031420, gene_TRIDC1BG036880 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G208400.1, TraesCS1B02G222400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb391750_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47008 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15634 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.612, evm.TU.LG26.416 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g05700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.173 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22411 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4694 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20324, nbisL1-mrna-20325 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.387 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014280 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3528 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6688 |
| Salicaceae | Populus euphratica | 1 | populus_peu03573 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634909 |
| Solanaceae | Solanum chilense | 1 | SOLCI004163000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028715 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20586_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0220 |
| Zosteraceae | Zostera marina | 1 | Zosma03g26790.v3.1 |