Basic Information
Locus ID:
nbisL1-mrna-11251
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the glycosyltransferase 8 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002122F_pilon | 1859502 | 1863283 | - | nbisL1-mrna-11251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 68,217.04 Da | 36.24 | 87.86 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06429 | GT8_like_1 | 316 | 576 | 2.70202E-101 | - |
| Pfam | PF01501 | Glycosyl transferase family 8 | 334 | 562 | 3.3E-84 | IPR002495 |
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 316 | 588 | 6.75E-60 | IPR029044 |
| Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 317 | 582 | 4.9E-41 | IPR029044 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 129 | - | - |
| Coils | Coil | Coil | 247 | 267 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47780.1 | galacturonosyltransferase 4. Encodes a protein with putative galacturonosyltransferase activity. | 0 |
| RefSeq | XP_012082219.1 | probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas] | 0 |
| Q93ZX7 | Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=GAUT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LNI9 | Hexosyltransferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology