Basic Information
Locus ID:
nbisL1-mrna-11247
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000062F_pilon | 2667648 | 2674396 | - | nbisL1-mrna-11247 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 31,296.21 Da | 43.73 | 79.68 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 29 | 280 | 2.73876E-49 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 80 | 105 | 0.11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 164 | 197 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 39 | 73 | 1.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 245 | 280 | 0.006 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 26 | 280 | 8.96E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 129 | 280 | 4.7E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 16 | 128 | 1.4E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 241 | 280 | 7.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 77 | 117 | 0.0053 | IPR001680 |
| SMART | SM00320 | WD40_4 | 34 | 73 | 1.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 159 | 197 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 120 | 156 | 43.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 200 | 239 | 3.4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 41 | 76 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 84 | 126 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 41 | 76 | 11.339228 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 248 | 280 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 248 | 280 | 11.154684 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 60 | 74 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_030933758.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Quercus lobata] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2IP79 | Transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology