Basic Information
Locus ID:
nbisL1-mrna-11236
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000062F_pilon | 2593451 | 2594662 | - | nbisL1-mrna-11236 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 43,616.49 Da | 67.33 | 63.97 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 355 | 392 | 6.51942E-11 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 352 | 396 | 4.8E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 354 | 399 | 1.32E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 328 | 403 | 1.4E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 355 | 392 | 7.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 355 | 393 | 10.822189 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 193 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021661635.1 | uncharacterized protein LOC110650825 isoform X1 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A6A6K8M3 | RING-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_026098 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology