Basic Information
Locus ID:
nbisL1-mrna-11233
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000062F_pilon | 2581583 | 2583137 | + | nbisL1-mrna-11233 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 11,774.96 Da | 49.48 | 58.64 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 28 | 101 | 4.38701E-47 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 30 | 100 | 1.5E-24 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 10 | 106 | 3.37E-28 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 28 | 109 | 4.5E-39 | - |
| SMART | SM00213 | ubq_7 | 30 | 101 | 1.2E-13 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 28 | 105 | 16.27632 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_002458989.1 | small ubiquitin-related modifier 1 [Sorghum bicolor] | 0 |
| P55857 | Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1 | 0 | |
| TrEMBL | C5XG88 | Small ubiquitin-related modifier OS=Sorghum bicolor OX=4558 GN=SORBI_3003G402600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology