Basic Information
Locus ID:
nbisL1-mrna-11231
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 10348168 | 10348710 | + | nbisL1-mrna-11231 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 20,468.92 Da | 47.10 | 84.61 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 135 | 176 | 1.0E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 135 | 179 | 7.34E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 180 | 2.0E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 176 | 10.497623 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 82 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004487753.1 | - | 0 |
| TrEMBL | A0A1S2XDR3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB02g014130.2N |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.349 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-11222, nbisL1-mrna-11223, nbisL1-mrna-11227 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10588, nbisL1-mrna-6105 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000006l.50 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20387 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7095 |