Basic Information
Locus ID:
nbisL1-mrna-11222
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 10279717 | 10280265 | - | nbisL1-mrna-11222 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.51 | 20,640.99 Da | 45.66 | 83.68 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 136 | 179 | 1.4E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 136 | 181 | 1.14E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 182 | 8.7E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 137 | 178 | 0.0089 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 137 | 179 | 12.238477 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 85 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G35330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004487753.1 | - | 0 |
| Q9C7I1 | RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S2XDR3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB02g014130.2N |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.349 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-11222, nbisL1-mrna-11223, nbisL1-mrna-11227 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10588, nbisL1-mrna-6105 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000006l.50 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20387 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7095 |