Basic Information
Locus ID:
nbisL1-mrna-11217
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 14610724 | 14613410 | + | nbisL1-mrna-11217 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 30,246.72 Da | 30.64 | 72.86 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 131 | 6.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 62 | 88 | 0.27 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 270 | 3.36E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 190 | 273 | 1.8E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 189 | 4.0E-68 | IPR015943 |
| SMART | SM00320 | WD40_4 | 91 | 131 | 7.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 49 | 88 | 0.015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 173 | 0.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3 | 38 | 14.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 140 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 73 | 97 | 9.03805 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 75 | 89 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_022737884.1 | protein SPA1-RELATED 2-like isoform X2 [Durio zibethinus] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6P5YBJ0 | protein SPA1-RELATED 2-like isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111290714 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology