Basic Information
Locus ID:
nbisL1-mrna-11214
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Disease resistance protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000062F_pilon | 2486005 | 2488897 | - | nbisL1-mrna-11214 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 95,212.66 Da | 36.99 | 104.50 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 152 | 355 | 7.0E-35 | IPR002182 |
| SUPERFAMILY | SSF52058 | L domain-like | 449 | 708 | 5.89E-8 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 126 | 389 | 5.82E-41 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 130 | 294 | 2.7E-24 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 463 | 737 | 1.4E-5 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 295 | 378 | 1.2E-11 | IPR042197 |
| SMART | SM00382 | AAA_5 | 162 | 299 | 1.8E-4 | IPR003593 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 440 | 452 | - | IPR018247 |
| PRINTS | PR00364 | Disease resistance protein signature | 329 | 343 | 8.8E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 663 | 679 | 8.8E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 238 | 252 | 8.8E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 165 | 180 | 8.8E-12 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27220.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_021655287.1 | probable disease resistance protein At4g27220 [Hevea brasiliensis] | 0 |
| O81825 | Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana OX=3702 GN=At4g27220 PE=2 SV=1 | 0 | |
| TrEMBL | B9S9G0 | Disease resistance protein RPS5, putative OS=Ricinus communis OX=3988 GN=RCOM_0885080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology