Basic Information
Locus ID:
nbisL1-mrna-1121
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 11080775 | 11090153 | - | nbisL1-mrna-1121 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 126,975.98 Da | 49.49 | 83.48 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 564 | 697 | 4.83509E-25 | - |
| Pfam | PF12937 | F-box-like | 955 | 995 | 6.6E-12 | IPR001810 |
| Pfam | PF17862 | AAA+ lid domain | 719 | 760 | 1.1E-10 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 566 | 696 | 7.0E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 525 | 754 | 6.49E-57 | IPR027417 |
| SUPERFAMILY | SSF81383 | F-box domain | 948 | 1045 | 6.54E-16 | IPR036047 |
| Gene3D | G3DSA:1.10.8.60 | - | 698 | 778 | 5.5E-94 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 939 | 1051 | 6.4E-14 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 525 | 697 | 5.5E-94 | IPR027417 |
| SMART | SM00382 | AAA_5 | 562 | 699 | 1.1E-20 | IPR003593 |
| SMART | SM00256 | fbox_2 | 956 | 996 | 1.5E-9 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 950 | 996 | 12.33237 | IPR001810 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 669 | 688 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 753 | 792 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 753 | 794 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 511 | - | - |
| Coils | Coil | Coil | 749 | 769 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_021671422.1 | nuclear valosin-containing protein-like [Hevea brasiliensis] | 0 |
| Q9FLX3 | F-box protein At5g52880 OS=Arabidopsis thaliana OX=3702 GN=At5g52880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A498KJH8 | F-box domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_022483 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology