Basic Information
Locus ID:
nbisL1-mrna-11200
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 10022975 | 10029421 | + | nbisL1-mrna-11200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 82,226.90 Da | 52.86 | 64.88 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 446 | 478 | 3.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 594 | 631 | 3.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 553 | 588 | 6.2E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 443 | 728 | 4.23E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 433 | 738 | 7.1E-49 | IPR015943 |
| SMART | SM00320 | WD40_4 | 679 | 724 | 2.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 440 | 479 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 634 | 672 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 551 | 589 | 9.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 592 | 631 | 2.2E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 598 | 632 | 10.574686 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 558 | 592 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 598 | 632 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 447 | 488 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 447 | 480 | 10.653776 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 558 | 598 | 13.014815 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 466 | 480 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 618 | 632 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 576 | 590 | 2.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 136 | - | - |
| Coils | Coil | Coil | 16 | 53 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021594595.1 | WD repeat-containing protein 44 [Manihot esculenta] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K3Q3 | WD-repeat protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology