Basic Information
Locus ID:
nbisL1-mrna-11199
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 3744979 | 3750703 | - | nbisL1-mrna-11199 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 162,785.06 Da | 39.15 | 107.83 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 886 | 1176 | 4.83793E-77 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 272 | 559 | 2.57091E-83 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 584 | 788 | 4.32734E-80 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1199 | 1419 | 1.92903E-121 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 271 | 538 | 1.9E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1218 | 1366 | 6.3E-31 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 611 | 741 | 2.9E-17 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 891 | 1125 | 2.7E-26 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 266 | 566 | 6.28E-34 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1190 | 1427 | 8.39E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 888 | 1183 | 1.09E-45 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 611 | 802 | 7.42E-48 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 251 | 568 | 5.7E-50 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1184 | 1437 | 3.7E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 852 | 1182 | 1.4E-53 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 570 | 822 | 1.1E-64 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1227 | 1414 | 8.0E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 615 | 797 | 3.5E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 888 | 1164 | 33.738441 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1201 | 1435 | 17.693876 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 584 | 812 | 19.541273 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 275 | 551 | 35.476322 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 714 | 728 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_034914533.1 | putative ABC transporter C family member 15 [Populus alba] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A4V6ABI6 | ABC-type xenobiotic transporter OS=Populus alba OX=43335 GN=D5086_0000060630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology