Basic Information
Locus ID:
nbisL1-mrna-11184
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 14377654 | 14381252 | - | nbisL1-mrna-11184 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 12,671.01 Da | 56.02 | 56.70 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 105 | 3.16746E-27 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 68 | 104 | 2.1E-6 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 8 | 52 | 1.9E-7 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 110 | 1.56E-24 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 61 | 112 | 4.6E-11 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 60 | 1.1E-16 | IPR016135 |
| SMART | SM00212 | ubc_7 | 7 | 110 | 6.9E-7 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 4 | 112 | 17.951015 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 0 |
| RefSeq | XP_007153830.1 | hypothetical protein PHAVU_003G068500g [Phaseolus vulgaris] | 0 |
| P42745 | Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana OX=3702 GN=UBC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J5FA35 | UBC core domain-containing protein OS=Zingiber officinale OX=94328 GN=ZIOFF_059936 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology