Basic Information
Locus ID:
nbisL1-mrna-11171
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Hippocampus abundant transcript 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002122F_pilon | 1413996 | 1420389 | + | nbisL1-mrna-11171 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 48,250.36 Da | 35.54 | 106.36 | 0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 10 | 423 | 8.10867E-59 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 10 | 385 | 6.6E-28 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 10 | 428 | 3.27E-39 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 5 | 426 | 6.9E-40 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 1 | 192 | 9.569702 | IPR020846 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_034919526.1 | uncharacterized protein LOC118052636 isoform X1 [Populus alba] | 0 |
| P02980 | Tetracycline resistance protein, class B OS=Escherichia coli OX=562 GN=tetA PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MKK2 | Hippocampus abundant transcript-like protein 1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology