Basic Information
Locus ID:
nbisL1-mrna-11138
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002122F_pilon | 1040731 | 1044042 | + | nbisL1-mrna-11138 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 54,557.72 Da | 33.39 | 72.29 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 35 | 165 | 1.94484E-40 | IPR033734 |
| CDD | cd09612 | Jacalin | 198 | 328 | 1.02996E-39 | IPR033734 |
| CDD | cd09612 | Jacalin | 372 | 494 | 6.35563E-37 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 198 | 328 | 6.2E-29 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 362 | 495 | 5.3E-31 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 35 | 166 | 1.6E-32 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 25 | 166 | 5.1E-43 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 352 | 495 | 1.31E-41 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 188 | 327 | 1.7E-40 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 174 | 327 | 1.7E-50 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 14 | 165 | 2.3E-54 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 349 | 496 | 4.1E-50 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 35 | 166 | 1.4E-37 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 198 | 329 | 3.5E-37 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 362 | 495 | 2.8E-38 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 187 | 329 | 48.150753 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 24 | 166 | 48.216408 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 351 | 495 | 50.86134 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_021667091.1 | jacalin-related lectin 3-like [Hevea brasiliensis] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2ISF8 | Jacalin-related lectin 3 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology