Basic Information
Locus ID:
nbisL1-mrna-11130
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002122F_pilon | 940990 | 946153 | + | nbisL1-mrna-11130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 137,066.44 Da | 34.79 | 93.04 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 316 | 2.56514E-75 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 240 | 275 | 3.9E-5 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 339 | 767 | 3.6E-131 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 197 | 230 | 9.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 163 | 2.6E-7 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 814 | 1216 | 2.2E-167 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 79 | 6.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 121 | 3.8E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 314 | 1.31E-73 | IPR036322 |
| SUPERFAMILY | SSF69322 | Tricorn protease domain 2 | 322 | 595 | 5.62E-12 | - |
| Gene3D | G3DSA:1.25.40.470 | - | 639 | 811 | 1.4E-63 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 318 | 4.1E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 192 | 231 | 2.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 275 | 2.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 8.5E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 2.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 6.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 316 | 180.0 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 1212 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 164 | 12.578312 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 243 | 284 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 172 | 15.387508 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 79 | 10.495596 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 243 | 275 | 11.391954 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 199 | 240 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 199 | 233 | 10.996502 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 11.365591 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 12.881143 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 150 | 164 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 4.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 262 | 276 | 4.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 4.2E-7 | IPR020472 |
| Coils | Coil | Coil | 1130 | 1150 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_007213296.1 | coatomer subunit alpha-1 [Prunus persica] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2IV55 | Coatomer subunit alpha OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology