Basic Information
Locus ID:
nbisL1-mrna-11102
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 13598333 | 13599831 | - | nbisL1-mrna-11102 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 41,914.61 Da | 46.72 | 78.17 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 318 | 357 | 6.1E-8 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 109 | 231 | 1.2E-12 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 43 | 106 | 1.13E-6 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 311 | 361 | 2.09E-10 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 309 | 360 | 1.2E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 89 | 250 | 5.7E-17 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 315 | 357 | 11.032289 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_017971981.1 | PREDICTED: F-box protein At1g67340 [Theobroma cacao] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3C6Z7 | F-box protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00010263pilonHSYRG00060 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology