Basic Information
Locus ID:
nbisL1-mrna-11097
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
leucine-rich repeat receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 8568647 | 8579369 | + | nbisL1-mrna-11097 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 77,712.94 Da | 31.96 | 93.25 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 236 | 295 | 9.9E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 115 | 174 | 5.6E-7 | IPR001611 |
| Pfam | PF11721 | Malectin domain | 328 | 510 | 1.6E-43 | IPR021720 |
| SUPERFAMILY | SSF52058 | L domain-like | 90 | 301 | 2.98E-47 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 194 | 5.1E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 195 | 321 | 8.9E-25 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 540 | 647 | 1.8E-8 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 325 | 515 | 1.7E-39 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14840.2 | Leucine-rich repeat transmembrane protein kinase. | 0 |
| RefSeq | XP_021645398.1 | probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Hevea brasiliensis] | 0 |
| C0LGN2 | Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 OS=Arabidopsis thaliana OX=3702 GN=LRR-RLK PE=1 SV=1 | 0 | |
| TrEMBL | A0A140G4W2 | LRR-RLK OS=Vernicia montana OX=316732 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19151, jg24283 |
| Brassicaceae | Brassica nigra | 1 | BniB08g059010.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0910, Ceq04G0500 |
| Poaceae | Echinochloa crus-galli | 1 | CH08.1473 |
| Poaceae | Oryza coarctata | 1 | Oco18G002890 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.130 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11097, nbisL1-mrna-24160 |
| Rhizophoraceae | Rhizophora mangle | 8 | nbisL1-mrna-15312, nbisL1-mrna-15313, nbisL1-mrna-15314 ... |
| Salicaceae | Populus euphratica | 1 | populus_peu26044 |