Basic Information
Locus ID:
nbisL1-mrna-11052
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000062F_pilon | 1597435 | 1599758 | - | nbisL1-mrna-11052 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 51,805.83 Da | 51.95 | 101.39 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 4 | 39 | 3.3E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 49 | 2.75E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 129 | 280 | 7.85E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 4 | 311 | 8.5E-10 | IPR032675 |
| SMART | SM00256 | fbox_2 | 8 | 48 | 0.0011 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 2 | 37 | 9.497469 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22660.1 | FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein. | 0 |
| RefSeq | XP_034887628.1 | F-box/LRR-repeat protein 13-like [Populus alba] | 0 |
| Q9FNJ5 | F-box/FBD/LRR-repeat protein At5g22660 OS=Arabidopsis thaliana OX=3702 GN=At5g22660 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U5QZ57 | Putative FBD-associated F-box protein OS=Populus alba OX=43335 GN=D5086_0000021620 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology