Basic Information
Locus ID:
nbisL1-mrna-11039
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 13049286 | 13051514 | - | nbisL1-mrna-11039 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 82,514.46 Da | 36.88 | 92.90 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 516 | 563 | 9.1E-9 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 317 | 346 | 2.6E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 115 | 139 | 0.092 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 591 | 613 | 0.094 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 415 | 462 | 2.6E-10 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 289 | 315 | 0.063 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 215 | 244 | 5.0E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 87 | 113 | 0.036 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 367 | 475 | 4.6E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 273 | 366 | 4.6E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 16 | 179 | 8.6E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 495 | 713 | 1.5E-36 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 180 | 272 | 2.6E-8 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 519 | 552 | 9.9E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 418 | 451 | 1.2E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 389 | 418 | 7.9E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 215 | 249 | 8.0E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 517 | 551 | 12.210946 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 113 | 147 | 8.834866 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 416 | 450 | 12.046526 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 315 | 349 | 8.758137 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 213 | 247 | 9.920034 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17210.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_039047199.1 | pentatricopeptide repeat-containing protein At2g17210 [Hibiscus syriacus] | 0 |
| Q9SII7 | Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E77 PE=3 SV=2 | 0 | |
| TrEMBL | A0A7J9C3F3 | Pentatricopeptide repeat-containing protein OS=Gossypium gossypioides OX=34282 GN=Gogos_005716 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg27612, jg27613 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26338 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g212480 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg10913, Sbi_jg10915, Sbi_jg10916, Sbi_jg47421 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21663 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018759 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55601, Sgl60815 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015190, gene:ENSEOMG00000039054 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0027890, CQ.Regalona.r1.7BG0001720 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30108780, pistato.v30169640 |
| Apiaceae | Apium graveolens | 1 | Ag10G00415 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G005360 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701176 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2373.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G02897 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G17210.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023059m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g30530.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g064900.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1847 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g08210 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11039 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.424 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05603 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151770, gene-QOZ80_2BG0207140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0083550.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020676 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr13G000060 |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G609100, Tel1E01G609200, Tel1E01G609400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG054850, gene_TRIDC1BG062750 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G372800.1.cds1, TraesCS1B02G392800.1.cds1 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14772 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1953, evm.TU.LG15.1205 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g14980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2381 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3192 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.4 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18558 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599397 |
| Solanaceae | Solanum chilense | 1 | SOLCI003417500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006501 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8823 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23610.v3.1 |