Basic Information
Locus ID:
nbisL1-mrna-1099
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000150F_pilon | 4002659 | 4005669 | + | nbisL1-mrna-1099 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 27,847.18 Da | 36.01 | 93.44 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 26 | 106 | 8.2589E-53 | - |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 117 | 199 | 9.1E-25 | IPR001351 |
| Pfam | PF07650 | KH domain | 31 | 104 | 3.9E-13 | IPR004044 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 22 | 110 | 1.7E-25 | IPR009019 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 104 | 202 | 4.05E-28 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 11 | 102 | 4.9E-44 | IPR015946 |
| Gene3D | G3DSA:3.30.1140.32 | - | 104 | 230 | 2.5E-65 | IPR036419 |
| SMART | SM00322 | kh_6 | 53 | 122 | 0.0084 | IPR004087 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 21 | 221 | 5.0E-71 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 32 | 103 | 11.298677 | IPR004044 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 158 | 194 | - | IPR018280 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_012077215.1 | 40S ribosomal protein S3-3 [Jatropha curcas] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5AWX5 | KH type-2 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_029768 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology