Basic Information
Locus ID:
nbisL1-mrna-10988
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 5016528 | 5019888 | - | nbisL1-mrna-10988 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.05 | 59,310.64 Da | 38.55 | 79.50 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 410 | 444 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 244 | 281 | 6.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 373 | 405 | 1.3E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 244 | 536 | 5.49E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 375 | 542 | 4.4E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 233 | 374 | 7.2E-14 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 18 | 42 | 0.0035 | IPR000571 |
| SMART | SM00320 | WD40_4 | 453 | 492 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 532 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 368 | 405 | 6.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 239 | 281 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 408 | 445 | 4.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 321 | 360 | 20.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 249 | 290 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 17 | 43 | 11.309735 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 375 | 408 | 10.706503 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 249 | 281 | 10.785595 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 415 | 444 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 375 | 414 | 13.549507 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 392 | 406 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 268 | 282 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 392 | 406 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 432 | 446 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 82 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_037493036.1 | zinc finger CCCH domain-containing protein 48 [Jatropha curcas] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2LRF0 | C3H1-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology