Basic Information
Locus ID:
nbisL1-mrna-10917
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Short Name:
NTMC2T4.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 6218548 | 6224088 | - | nbisL1-mrna-10917 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 56,404.48 Da | 23.75 | 109.37 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 266 | 353 | 4.78332E-27 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 248 | 1.8E-17 | IPR039010 |
| Pfam | PF00168 | C2 domain | 264 | 353 | 8.5E-22 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 262 | 392 | 2.98E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 259 | 418 | 5.2E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 265 | 362 | 1.3E-20 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 247 | 363 | 20.541616 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 249 | 23.768656 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 281 | 293 | 1.9E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 306 | 319 | 1.9E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 328 | 336 | 1.9E-5 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 522 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_021613362.1 | calcium-dependent lipid-binding protein [Manihot esculenta] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MUP3 | Uncharacterized protein MANES_05G043200 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology