Basic Information
Locus ID:
nbisL1-mrna-10904
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 4866913 | 4871580 | - | nbisL1-mrna-10904 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 44,924.91 Da | 59.64 | 77.76 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.91005E-31 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 381 | 423 | 3.50082E-24 | - |
| Pfam | PF09280 | XPC-binding domain | 304 | 359 | 2.0E-21 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 201 | 236 | 4.5E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 6.3E-19 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 385 | 420 | 9.5E-12 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 2.7E-22 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 300 | 366 | 1.83E-21 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 195 | 249 | 3.02E-11 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 366 | 427 | 9.89E-15 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 377 | 424 | 4.0E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 295 | 360 | 2.8E-26 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.2E-27 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 191 | 241 | 6.1E-21 | - |
| SMART | SM00727 | CBM | 302 | 345 | 3.6E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 385 | 422 | 1.1E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 5.5E-21 | IPR000626 |
| SMART | SM00165 | uba_6 | 198 | 238 | 0.0037 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 121 | 428 | 1.8E-82 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.370096 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 382 | 423 | 14.643341 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 196 | 239 | 12.137243 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 330 | 352 | 4.4E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 411 | 426 | 4.4E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 396 | 410 | 4.4E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 379 | 395 | 4.4E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 277 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021637897.1 | ubiquitin receptor RAD23c-like [Hevea brasiliensis] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MDW7 | Ubiquitin receptor RAD23 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology