Basic Information
Locus ID:
nbisL1-mrna-10889
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 5079231 | 5087754 | - | nbisL1-mrna-10889 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 139,737.63 Da | 48.72 | 76.30 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1122 | 1165 | 1.44273E-17 | - |
| CDD | cd12108 | Hr-like | 306 | 434 | 1.29685E-19 | - |
| CDD | cd12108 | Hr-like | 47 | 173 | 7.39311E-31 | - |
| CDD | cd12108 | Hr-like | 654 | 810 | 4.20232E-26 | - |
| Pfam | PF14599 | Zinc-ribbon | 1170 | 1227 | 1.2E-23 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 994 | 1069 | 5.9E-19 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 1122 | 1164 | 1.5E-7 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 304 | 436 | 8.8E-7 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 650 | 811 | 1.5E-7 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 49 | 175 | 1.1E-12 | IPR012312 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1060 | 1115 | 1.12E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 986 | 1050 | 7.32E-17 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1122 | 1171 | 7.51E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1118 | 1167 | 1.0E-9 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1195 | 1235 | 2.8E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 303 | 451 | 1.3E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 43 | 193 | 6.8E-34 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 646 | 874 | 5.9E-24 | - |
| SMART | SM00184 | ring_2 | 1123 | 1164 | 1.5E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 987 | 1056 | 26.394487 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1123 | 1165 | 11.294285 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1059 | 1122 | 30.083912 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_024466172.1 | zinc finger protein BRUTUS isoform X1 [Populus trichocarpa] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K0V3 | Uncharacterized protein LOC105113207 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology