Basic Information
Locus ID:
nbisL1-mrna-10889
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 11820180 | 11829736 | - | nbisL1-mrna-10889 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 115,178.12 Da | 35.65 | 86.87 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 36 | 312 | 0.0 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 353 | 445 | 1.2E-21 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 897 | 1003 | 9.8E-11 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 603 | 815 | 1.8E-46 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 37 | 348 | 4.4E-95 | IPR000602 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 455 | 1007 | 2.35E-137 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 353 | 453 | 6.54E-29 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 26 | 349 | 4.17E-109 | IPR011330 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 36 | 316 | 4.3E-123 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1360 | - | 883 | 1011 | 1.8E-37 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 317 | 395 | 1.8E-28 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 396 | 452 | 9.6E-24 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 597 | 863 | 2.0E-89 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 473 | 594 | 9.2E-28 | IPR013780 |
| SMART | SM00872 | Alpha_mann_mid_2 | 353 | 427 | 6.3E-23 | IPR015341 |
| Coils | Coil | Coil | 944 | 964 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_016738629.2 | probable alpha-mannosidase At5g13980 isoform X1 [Gossypium hirsutum] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5D2CUB2 | Alpha-mannosidase OS=Gossypium darwinii OX=34276 GN=ES288_D04G087700v1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology