Basic Information
Locus ID:
nbisL1-mrna-10883
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000062F_pilon | 678882 | 682701 | - | nbisL1-mrna-10883 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 48,656.90 Da | 38.35 | 88.54 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 40 | 137 | 2.9E-7 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 212 | 340 | 9.3E-12 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 195 | 341 | 1.05E-15 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 35 | 174 | 8.5E-18 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 173 | 341 | 7.3E-10 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 28 | 169 | 9.5E-11 | IPR036378 |
| SMART | SM00554 | fasc_3 | 237 | 341 | 8.7E-11 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 29 | 177 | 9.992067 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 199 | 338 | 12.654673 | IPR000782 |
| Coils | Coil | Coil | 418 | 438 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_021680099.1 | fasciclin-like arabinogalactan protein 2 [Hevea brasiliensis] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6KWA7 | Fasciclin-like arabinogalactan protein 2 OS=Hevea brasiliensis OX=3981 GN=GH714_023004 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology