Basic Information
Locus ID:
nbisL1-mrna-10871
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
F-box associated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 5674942 | 5678396 | + | nbisL1-mrna-10871 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 51,304.72 Da | 39.28 | 88.90 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 264 | 356 | 3.6E-8 | IPR006527 |
| Pfam | PF00646 | F-box domain | 21 | 55 | 2.5E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 118 | 5.89E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 73 | 5.7E-8 | - |
| SMART | SM00256 | fbox_2 | 21 | 61 | 1.1E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 122 | 370 | 6.7E-22 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 15 | 60 | 10.822189 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G28223.1 | F-box family protein. | 0 |
| RefSeq | XP_030944850.1 | - | 0 |
| Q9SSQ2 | F-box protein At1g52495 OS=Arabidopsis thaliana OX=3702 GN=At1g52495 PE=4 SV=1 | 0 | |
| TrEMBL | A0A7N2RCX9 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.149 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-10871, nbisL1-mrna-11178, nbisL1-mrna-29578 ... |