Basic Information
Locus ID:
nbisL1-mrna-10850
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
SEC12-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 5559166 | 5562182 | - | nbisL1-mrna-10850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 44,339.06 Da | 41.64 | 89.66 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 211 | 229 | 0.063 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 61 | 372 | 1.41E-34 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 62 | 380 | 3.8E-65 | IPR015943 |
| SMART | SM00320 | WD40_4 | 160 | 198 | 0.15 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 240 | 0.84 | IPR001680 |
| SMART | SM00320 | WD40_4 | 292 | 331 | 6.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 334 | 374 | 1.8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 215 | 249 | 9.238559 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 55 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01470.1 | SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. | 0 |
| RefSeq | XP_021600013.1 | SEC12-like protein 2 [Manihot esculenta] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A2P2KSE6 | SEC12-like protein 2 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology