Basic Information
Locus ID:
nbisL1-mrna-10828
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 11270994 | 11276203 | + | nbisL1-mrna-10828 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.47 | 74,991.43 Da | 48.60 | 68.64 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 19 | 48 | 2.61946E-4 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 385 | 514 | 4.41873E-62 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 397 | 505 | 7.2E-33 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 190 | 360 | 1.1E-49 | IPR011545 |
| Pfam | PF00397 | WW domain | 18 | 48 | 3.7E-6 | IPR001202 |
| SUPERFAMILY | SSF51045 | WW domain | 9 | 50 | 1.14E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 238 | 520 | 8.67E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 377 | 547 | 1.6E-57 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 14 | 61 | 5.3E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 142 | 376 | 1.5E-87 | IPR027417 |
| SMART | SM00487 | ultradead3 | 185 | 388 | 4.9E-66 | IPR014001 |
| SMART | SM00490 | helicmild6 | 425 | 505 | 3.0E-33 | IPR001650 |
| SMART | SM00456 | ww_5 | 17 | 50 | 9.2E-6 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 16 | 50 | 10.7974 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 197 | 371 | 30.641338 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 166 | 194 | 11.104688 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 400 | 544 | 25.03384 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 317 | 325 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 22 | 48 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 686 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 686 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 624 | 640 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14610.2 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_039009897.1 | DEAD-box ATP-dependent RNA helicase 14-like isoform X1 [Hibiscus syriacus] | 0 |
| Q9LYJ9 | DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A2ZXR0 | DEAD-box ATP-dependent RNA helicase 14 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110694pilonHSYRG00105 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology