Basic Information
Locus ID:
nbisL1-mrna-10826
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Fizzy-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002113F_pilon | 2478310 | 2481919 | + | nbisL1-mrna-10826 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 48,813.31 Da | 51.85 | 75.92 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 378 | 415 | 3.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 284 | 319 | 9.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 324 | 364 | 0.016 | IPR001680 |
| SUPERFAMILY | SSF117289 | Nucleoporin domain | 154 | 420 | 2.3E-44 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 123 | 417 | 3.7E-87 | IPR015943 |
| SMART | SM00320 | WD40_4 | 205 | 255 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 161 | 202 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 322 | 364 | 0.0019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 376 | 415 | 5.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 319 | 2.5E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 383 | 416 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 383 | 416 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 287 | 328 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 287 | 319 | 10.943775 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 402 | 416 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_021686258.1 | protein FIZZY-RELATED 2-like [Hevea brasiliensis] | 0 |
| Q9M7I2 | B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JF06 | Uncharacterized protein MANES_01G069800 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology