Basic Information
Locus ID:
nbisL1-mrna-10819
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 5849465 | 5853414 | - | nbisL1-mrna-10819 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 65,083.92 Da | 33.08 | 69.42 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 364 | 386 | 1.4E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 329 | 353 | 7.8E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 285 | 309 | 3.7E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 324 | 357 | 3.06E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 358 | 392 | 1.54E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 278 | 310 | 5.65E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 321 | 358 | 6.8E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 359 | 392 | 1.3E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 279 | 310 | 5.2E-12 | - |
| SMART | SM00547 | zf_4 | 331 | 355 | 1.0E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 287 | 311 | 2.6E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 364 | 388 | 5.0E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 285 | 314 | 9.33716 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 362 | 391 | 9.551712 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 329 | 358 | 9.111317 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 366 | 385 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 289 | 308 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 278 | - | - |
| Coils | Coil | Coil | 237 | 257 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_024465182.2 | uncharacterized protein LOC7462679 isoform X1 [Populus trichocarpa] | 0 |
| TrEMBL | A0A2K1YS10 | Zinc finger protein VAR3, chloroplastic OS=Populus trichocarpa OX=3694 GN=POPTR_010G107400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology