Basic Information
Locus ID:
nbisL1-mrna-1080
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
WD repeat domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 11217758 | 11221227 | + | nbisL1-mrna-1080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 33,191.79 Da | 42.08 | 77.64 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 15 | 300 | 4.4296E-69 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 265 | 299 | 3.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 95 | 132 | 3.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 55 | 90 | 3.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 218 | 258 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 15 | 48 | 9.6E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 300 | 7.79E-76 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 9 | 301 | 4.7E-74 | IPR015943 |
| SMART | SM00320 | WD40_4 | 93 | 132 | 4.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 2.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 51 | 90 | 1.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 137 | 174 | 0.88 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 214 | 5.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 9 | 48 | 2.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 258 | 0.15 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 100 | 132 | 11.497408 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 58 | 95 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 100 | 132 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 16 | 48 | 12.288313 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 301 | 14.239212 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 58 | 99 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 16 | 57 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 301 | 15.688272 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 35 | 49 | 2.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 287 | 301 | 2.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 119 | 133 | 2.9E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G64730.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_034695480.1 | WD repeat domain-containing protein 83 [Vitis riparia] | 0 |
| Q5BLX8 | WD repeat domain-containing protein 83 OS=Rattus norvegicus OX=10116 GN=Wdr83 PE=1 SV=1 | 0 | |
| TrEMBL | D7TZV1 | WD_REPEATS_REGION domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g01580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31172 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8209 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027164 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g133420 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30890, Sbi_jg58386 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28266 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009957 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33712, Sgl39023 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000005744 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0022690 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30199970 |
| Apiaceae | Apium graveolens | 1 | Ag3G01226 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G001820 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701229 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1674.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G19286 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G64730.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004678m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g27800.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g013010.2N, BniB06g013040.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1863 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1928 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g00430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0068s00026.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g01760 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2160 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.800 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014391 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27575 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.2131, BH07.2093, CH07.1990 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0133380, gene-QOZ80_2BG0188940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0600920.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_022886 |
| Poaceae | Oryza coarctata | 1 | Oco03G012080 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g33860.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G157300 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G014720, Chr13G010740 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G468300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG038550, gene_TRIDC6BG045440 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G250200.1, TraesCS6B02G275200.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb181820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18851 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16445 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.331, evm.TU.LG15.619 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g01410 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.971 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1080 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16394 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2267 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.645 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002276 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5104 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1684 |
| Salicaceae | Populus euphratica | 2 | populus_peu01474, populus_peu01492 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613909 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002924 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11092 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0467 |
| Zosteraceae | Zostera marina | 1 | Zosma01g42170.v3.1 |