Basic Information
Locus ID:
nbisL1-mrna-10778
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
PHD finger protein MALE STERILITY
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 6346364 | 6348792 | + | nbisL1-mrna-10778 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 77,228.77 Da | 38.82 | 85.25 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 618 | 663 | 5.1084E-25 | - |
| Pfam | PF00628 | PHD-finger | 619 | 665 | 7.5E-9 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 605 | 666 | 3.29E-14 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 606 | 667 | 2.1E-16 | IPR013083 |
| SMART | SM00249 | PHD_3 | 618 | 664 | 1.6E-7 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 616 | 666 | 8.5555 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 619 | 663 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22260.1 | RING/FYVE/PHD zinc finger superfamily protein. Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors. | 0 |
| RefSeq | XP_050232280.1 | PHD finger protein MALE STERILITY 1 [Mercurialis annua] | 0 |
| Q9FMS5 | PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana OX=3702 GN=MS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A345AHV1 | Transcription factor male sterility 1 OS=Tapiscia sinensis OX=112844 GN=MS1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology