Basic Information
Locus ID:
nbisL1-mrna-1077
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000150F_pilon | 3864090 | 3866194 | - | nbisL1-mrna-1077 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 21,949.42 Da | 50.15 | 76.03 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 76 | 128 | 3.36447E-12 | - |
| Pfam | PF12906 | RING-variant domain | 76 | 127 | 1.7E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 73 | 130 | 1.34E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 138 | 1.1E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 75 | 128 | 3.1E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 68 | 134 | 18.503471 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 49 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_012088157.1 | E3 ubiquitin-protein ligase MARCHF8 [Jatropha curcas] | 0 |
| TrEMBL | A0A067LJK8 | RING-CH-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_01345 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology