Basic Information
Locus ID:
nbisL1-mrna-10745
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 7023571 | 7026356 | - | nbisL1-mrna-10745 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 60,010.22 Da | 51.31 | 55.26 | -1.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 396 | 480 | 4.6E-20 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 497 | 528 | 8.4E-7 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 396 | 481 | 2.2E-30 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 336 | - | - |
| Coils | Coil | Coil | 385 | 422 | - | - |
| Coils | Coil | Coil | 434 | 454 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_043815083.1 | uncharacterized protein LOC110621561 [Manihot esculenta] | 0 |
| TrEMBL | A0A2P2IPX7 | PAPA-1 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology