Basic Information
Locus ID:
nbisL1-mrna-10738
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 4437200 | 4439082 | + | nbisL1-mrna-10738 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 41,778.16 Da | 53.81 | 83.29 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 321 | 363 | 7.09107E-16 | - |
| Pfam | PF13639 | Ring finger domain | 320 | 363 | 4.1E-12 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 23 | 90 | 4.4E-14 | IPR025287 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 143 | 223 | 1.0E-10 | IPR032872 |
| SUPERFAMILY | SSF57850 | RING/U-box | 311 | 366 | 2.78E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 282 | 368 | 2.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 321 | 362 | 1.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 363 | 12.504031 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024450751.1 | - | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A8T2ZI17 | RING-type domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_005050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology