Basic Information
Locus ID:
nbisL1-mrna-1073
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 8659151 | 8659927 | - | nbisL1-mrna-1073 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 29,069.40 Da | 52.88 | 62.36 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 42 | 93 | 1.4438E-26 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 44 | 76 | 2.3E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 29 | 97 | 5.11E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 105 | 9.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 44 | 91 | 8.0E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 44 | 92 | 12.710573 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 59 | 68 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_039014115.1 | E3 ubiquitin-protein ligase RMA3-like [Hibiscus syriacus] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2ZJ16 | RING-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110865pilonHSYRG00264 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology