Basic Information
Locus ID:
nbisL1-mrna-10702
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 10009568 | 10010713 | - | nbisL1-mrna-10702 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 42,239.61 Da | 44.35 | 104.41 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 7 | 49 | 5.31068E-25 | - |
| Pfam | PF04564 | U-box domain | 3 | 72 | 1.7E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 92 | 381 | 4.68E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 72 | 1.99E-26 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 81 | 381 | 2.0E-13 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 75 | 1.0E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 6 | 69 | 2.0E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 2 | 76 | 32.385872 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49780.1 | plant U-box 26. | 0 |
| RefSeq | XP_039015954.1 | U-box domain-containing protein 26-like [Hibiscus syriacus] | 0 |
| Q9FXA4 | U-box domain-containing protein 26 OS=Arabidopsis thaliana OX=3702 GN=PUB26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A2ZGI2 | RING-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110927pilonHSYRG00067 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17125, jg17126, jg39669 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17929 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027098 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g132670 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13448, Sbi_jg52419 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9431 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013434 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33766, Sgl39078 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000002619 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0022090, CQ.Regalona.r1.6BG0023250 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30200990, pistato.v30201300, pistato.v30201320 |
| Apiaceae | Apium graveolens | 2 | Ag3G01799, Ag7G02192 |
| Arecaceae | Cocos nucifera | 6 | COCNU_01G020700, contig69403781G000010 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103720520, gene-LOC103722209, gene-LOC120113030 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.639.V1.1, AsparagusV1_09.290.V1.1 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g07020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g12860 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10702 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.884 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014216 |
| Poaceae | Echinochloa crus-galli | 2 | BH09.1129, CH09.1268 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0316950, gene-QOZ80_4BG0348190 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0169630.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_019659, gene-QYE76_019674, gene-QYE76_044106 |
| Poaceae | Oryza coarctata | 1 | Oco08G006300 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g35680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G102100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300414, Pt_Chr0300437 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G012660, Chr25G010950, Chr26G006860, Chr30G010610 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G540200, Tel7E01G685100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG044540, gene_TRIDC2BG047230 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G307000.1, TraesCS2B02G323600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb082390_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-37810, nbis-gene-7639 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19731, Zma_g21310 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2423, evm.TU.LG17.1468 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g18430 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.864 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1049, nbisL1-mrna-971 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14605 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6538 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.675 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012826 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18796 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19692 |
| Salicaceae | Populus euphratica | 2 | populus_peu13658, populus_peu22822 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132639975 |
| Solanaceae | Solanum chilense | 1 | SOLCI004457900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019792 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19619_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0372 |
| Zosteraceae | Zostera marina | 1 | Zosma05g10970.v3.1 |