Basic Information
Locus ID:
nbisL1-mrna-10671
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
DNA repair protein recA homolog 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000133F_pilon | 4651855 | 4659289 | - | nbisL1-mrna-10671 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 48,167.35 Da | 37.51 | 87.36 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 92 | 415 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 95 | 357 | 7.8E-118 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 93 | 356 | 1.07E-54 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 357 | 414 | 7.72E-18 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 122 | 421 | 5.9E-103 | IPR027417 |
| SMART | SM00382 | AAA_5 | 144 | 315 | 7.0E-10 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 92 | 412 | 6.4E-144 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 286 | 361 | 28.081223 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 123 | 281 | 28.837778 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 300 | 308 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 214 | 243 | 6.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 386 | 403 | 6.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 297 | 325 | 6.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 180 | 209 | 6.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 252 | 281 | 6.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 332 | 361 | 6.7E-76 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 93 | 418 | 45.016594 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 444 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_021644305.1 | DNA repair protein recA homolog 1, chloroplastic [Hevea brasiliensis] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2K448 | Uncharacterized protein MANES_15G102600 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology