halophFGD

Basic Information

Locus ID: nbisL1-mrna-10653

Species & Taxonomic ID: Rhizophora apiculata & 106626

Genome Assembly: GCA_037832385.1

Description: May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr17	7275074	7283030	-	nbisL1-mrna-10653

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.78	112,717.55 Da	41.53	81.27	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	8	260	6.72625E-64	-
Pfam	PF00400	WD domain, G-beta repeat	174	212	8.8E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	134	170	2.4E-10	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	7	43	0.039	IPR001680
Pfam	PF13925	con80 domain of Katanin	868	1024	9.6E-52	IPR028021
Pfam	PF00400	WD domain, G-beta repeat	51	86	0.079	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	92	128	4.2E-7	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	6	297	1.62E-68	IPR036322
Gene3D	G3DSA:2.130.10.10	-	133	298	2.1E-34	IPR015943
Gene3D	G3DSA:2.130.10.10	-	2	132	1.9E-32	IPR015943
SMART	SM00320	WD40_4	131	170	8.4E-12	IPR001680
SMART	SM00320	WD40_4	89	128	3.2E-9	IPR001680
SMART	SM00320	WD40_4	215	253	3.4	IPR001680
SMART	SM00320	WD40_4	4	44	0.028	IPR001680
SMART	SM00320	WD40_4	47	86	7.0E-4	IPR001680
SMART	SM00320	WD40_4	173	212	8.3E-9	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	138	179	17.860455	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	96	137	15.253835	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	54	95	14.251289	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	54	95	10.469233	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	180	221	14.752563	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	180	215	11.89286	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	138	175	13.817396	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	96	130	11.998316	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	11	53	9.806668	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	199	213	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	157	171	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	199	213	1.8E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	115	129	1.8E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	157	171	1.8E-7	IPR020472
Hamap	MF_03022	Katanin p80 WD40 repeat-containing subunit B1 [KATNB1].	1	1029	19.498493	IPR026962
MobiDBLite	mobidb-lite	consensus disorder prediction	366	391	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	835	859	-	-

Gene Ontology

Biological Process:

GO:0051013 (microtubule severing)

Molecular Function:

GO:0005515 (protein binding) GO:0008017 (microtubule binding)

Cellular Component:

GO:0008352 (katanin complex)

KEGG Pathway

KO Term:

K18643 (katanin p80 WD40 repeat-containing subunit B1)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G61210.3	-
RefSeq	XP_006377307.1	katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 isoform X1 [Populus trichocarpa]
Swiss-Prot	F4HTH8	Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1
TrEMBL	A0A2P2L2P7	Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Rhizophora mucronata OX=61149 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg20304, jg22035, jg5079
Aizoaceae	Mesembryanthemum crystallinum	2	gene_22289, gene_25334
Amaranthaceae	Atriplex hortensis	4	Ah017931, Ah024700, Ah038645, Ah038646
Amaranthaceae	Beta vulgaris	1	BVRB_9g202260
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg10176, Sbi_jg14659, Sbi_jg26388, Sbi_jg55416
Amaranthaceae	Salicornia europaea	2	Seu_jg22253, Seu_jg25981
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00014013, GOSA_00023970
Amaranthaceae	Suaeda glauca	6	Sgl45799, Sgl45800, Sgl45839, Sgl50534, Sgl78017, Sgl80522
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000009427, gene:ENSEOMG00000011078 ... gene:ENSEOMG00000027532, gene:ENSEOMG00000031772, gene:ENSEOMG00000035988, gene:ENSEOMG00000041313, gene:ENSEOMG00000044088
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.2AG0005330, CQ.Regalona.r1.4AG0017400 ... CQ.Regalona.r1.4BG0017810, CQ.Regalona.r1.8AG0004330, CQ.Regalona.r1.8BG0004650
Anacardiaceae	Pistacia vera	2	pistato.v30092450, pistato.v30212810
Apiaceae	Apium graveolens	2	Ag5G01879, Ag8G01941
Arecaceae	Cocos nucifera	4	COCNU_08G009940, COCNU_09G006950, COCNU_14G006400 ... scaffold000040G000080
Arecaceae	Phoenix dactylifera	4	gene-LOC103696578, gene-LOC103698051, gene-LOC103714616 ... gene-LOC103716371
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.2222.V1.1, AsparagusV1_07.2138.V1.1
Asteraceae	Flaveria trinervia	3	Ftri13G03933, Ftri15G01385, Ftri5G14987
Brassicaceae	Arabidopsis thaliana	4	AT1G11160.1, AT1G61210.1, AT5G08390.1, AT5G23430.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10005394m.g.v1.0, Thhalv10006699m.g.v1.0 ... Thhalv10012683m.g.v1.0, Thhalv10023227m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g09830.v2.2, Sp2g03270.v2.2, Sp2g23730.v2.2 ... Sp6g34550.v2.2
Brassicaceae	Brassica nigra	5	BniB02g006050.2N, BniB02g076620.2N, BniB07g040740.2N ... BniB07g047230.2N, BniB08g003770.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G2447, Ceq03G1985
Casuarinaceae	Casuarina glauca	2	Cgl01G2704, Cgl03G2131
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno13g00050, gene.Cymno14g02460
Dunaliellaceae	Dunaliella salina	1	Dusal.0028s00016.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate03g12440, gene.Thate05g28660, gene.Thate07g10040 ... gene.Thate08g00910
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11052, nbisL1-mrna-3850, nbisL1-mrna-9404
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.1584, evm.TU.LG12.1006
Plantaginaceae	Plantago ovata	2	Pov_00005719, Pov_00027678
Plumbaginaceae	Limonium bicolor	5	Lb2G15301, Lb3G20755, Lb4G24638, Lb4G24640, Lb6G30412
Poaceae	Echinochloa crus-galli	10	AH01.1718, AH02.3487, AH09.2712, BH01.1919, BH02.3470 ... BH02.3505, BH09.2952, CH01.2180, CH02.3010, CH09.3250
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1AG0035730, gene-QOZ80_1BG0085760 ... gene-QOZ80_2AG0112260, gene-QOZ80_4AG0299350, gene-QOZ80_4BG0330040
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0045950.1, HORVU.MOREX.r3.2HG0209810.1 ... HORVU.MOREX.r3.3HG0293550.1
Poaceae	Lolium multiflorum	3	gene-QYE76_011771, gene-QYE76_047525, gene-QYE76_056127
Poaceae	Oryza coarctata	6	Oco01G021880, Oco02G022450, Oco07G019300, Oco08G018570 ... Oco19G006970, Oco20G006920
Poaceae	Oryza sativa	4	LOC_Os01g34680.1, LOC_Os01g57210.1, LOC_Os04g58130.1 ... LOC_Os10g35200.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G189600, gene-BS78_03G296900 ... gene-BS78_06G284100
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0300098, Pt_Chr0300135, Pt_Chr0502734, Pt_Chr0502789 ... Pt_Chr0601626
Poaceae	Sporobolus alterniflorus	9	Chr02G007960, Chr03G017620, Chr05G025550, Chr08G024140 ... Chr15G021670, Chr23G000850, Chr25G000650, Chr26G018430, Chr30G000690
Poaceae	Thinopyrum elongatum	3	Tel1E01G300100, Tel2E01G962200, Tel3E01G512000
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG025210, gene_TRIDC1BG030250 ... gene_TRIDC2AG077500, gene_TRIDC2BG085680, gene_TRIDC3AG046170, gene_TRIDC3BG052490
Poaceae	Triticum aestivum	10	TraesCS1A02G164300.1, TraesCS1B02G181100.1 ... TraesCS1D02G151100.1, TraesCS1D02G161300.1, TraesCS2A02G592600.1, TraesCS2B02G591600.2, TraesCS2D02G561900.1, TraesCS3A02G317500.1, TraesCS3B02G349000.2, TraesCS3D02G313800.1
Poaceae	Zea mays	5	Zm00001eb044790_P002, Zm00001eb066150_P001 ... Zm00001eb283500_P001, Zm00001eb369860_P004, Zm00001eb433770_P001
Poaceae	Zoysia japonica	3	nbis-gene-11745, nbis-gene-23209, nbis-gene-6199
Poaceae	Zoysia macrostachya	4	Zma_g11280, Zma_g20696, Zma_g22228, Zma_g8778
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.1606, evm.TU.LG01.1668, evm.TU.LG02.2342 ... evm.TU.LG14.854, evm.TU.LG14.894, evm.TU.LG23.577
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g04090, gene.Posoc10g00150
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60431.1, evm.TU.60432.1, evm.TU.Scaffold_15_RagTag.2
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-23809, nbisL1-mrna-26286
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-12115, nbisL1-mrna-9155
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-17357, nbisL1-mrna-21620
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000001l.1, evm.TU.utg000027l.100
Rhizophoraceae	Kandelia obovata	2	Maker00004589, Maker00017476
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10653, nbisL1-mrna-11719
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-23919, nbisL1-mrna-2922
Salicaceae	Populus euphratica	3	populus_peu05933, populus_peu18245, populus_peu19797
Solanaceae	Lycium barbarum	3	gene-LOC132613553, gene-LOC132621242, gene-LOC132621419
Solanaceae	Solanum chilense	3	SOLCI001186500, SOLCI004632600, SOLCI006635800
Solanaceae	Solanum pennellii	3	gene-LOC107011271, gene-LOC107011518, gene-LOC107015576
Tamaricaceae	Reaumuria soongarica	2	STRG.8204_chr05_-, gene_16689
Tamaricaceae	Tamarix chinensis	2	TC01G2388, TC07G1248
Zosteraceae	Zostera marina	2	Zosma01g35090.v3.1, Zosma03g28400.v3.1