Basic Information
Locus ID:
nbisL1-mrna-10624
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 7707215 | 7714080 | + | nbisL1-mrna-10624 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 65,721.60 Da | 52.85 | 77.19 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 306 | 595 | 2.40103E-46 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 354 | 384 | 3.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 479 | 510 | 0.0092 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 558 | 595 | 0.038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 317 | 342 | 0.001 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 304 | 595 | 9.16E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 282 | 435 | 3.7E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 436 | 595 | 3.3E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 388 | 428 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 556 | 595 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 510 | 2.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 342 | 9.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 3.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 514 | 553 | 450.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 310 | 345 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 563 | 595 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 352 | 393 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 310 | 345 | 9.282875 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 563 | 595 | 11.550137 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 352 | 384 | 9.862871 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 329 | 343 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 415 | 429 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 329 | 343 | 5.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 371 | 385 | 5.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 582 | 595 | 5.6E-6 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_021667376.1 | transcriptional corepressor LEUNIG-like [Hevea brasiliensis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | B9RBC4 | WD-repeat protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1674120 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology