Basic Information
Locus ID:
nbisL1-mrna-1061
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000003F_pilon | 6459775 | 6461923 | + | nbisL1-mrna-1061 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 49,029.04 Da | 41.90 | 76.19 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 102 | 400 | 2.6E-82 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 65 | 435 | 1.3E-128 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 57 | 437 | 2.3E-122 | IPR012334 |
| SMART | SM00710 | pbh1 | 323 | 344 | 4700.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 264 | 284 | 4000.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 294 | 315 | 31.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 241 | 262 | 6400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 214 | 240 | 1100.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 271 | 284 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_002519290.1 | polygalacturonase At1g48100 [Ricinus communis] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | B9RZX1 | Polygalacturonase, putative OS=Ricinus communis OX=3988 GN=RCOM_1002690 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology