Basic Information
Locus ID:
nbisL1-mrna-10605
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 9158942 | 9162304 | + | nbisL1-mrna-10605 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 93,171.77 Da | 42.48 | 89.58 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 741 | 782 | 1.8405E-24 | - |
| Pfam | PF04564 | U-box domain | 737 | 805 | 3.3E-15 | IPR003613 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 480 | 623 | 2.6E-22 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 447 | 647 | 1.02E-36 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 731 | 806 | 1.77E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 735 | 809 | 3.0E-26 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 552 | 716 | 8.9E-16 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 449 | 538 | 8.8E-17 | - |
| SMART | SM00504 | Ubox_2 | 740 | 803 | 5.2E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 736 | 810 | 35.145733 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 466 | 742 | 15.495825 | IPR000719 |
| Coils | Coil | Coil | 414 | 434 | - | - |
| Coils | Coil | Coil | 699 | 719 | - | - |
| Coils | Coil | Coil | 348 | 395 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65500.2 | - | 0 |
| RefSeq | XP_039069773.1 | LOW QUALITY PROTEIN: putative U-box domain-containing protein 50 [Hibiscus syriacus] | 0 |
| Q9FGD7 | Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana OX=3702 GN=PUB50 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5D3A886 | U-box domain-containing protein 50 OS=Gossypium mustelinum OX=34275 GN=E1A91_A02G163200v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17071, jg39565 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24158 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g133840 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14205, Sbi_jg53521 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10128 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010447 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33680, Sgl38992 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002571, gene:ENSEOMG00000003982 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0023030, CQ.Regalona.r1.6BG0024340 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30203890 |
| Apiaceae | Apium graveolens | 1 | Ag4G02506 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G003030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716216, gene-LOC120110300 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.524.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G24398 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G65500.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003671m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g28590.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g013820.2N, BniB07g043300.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0322 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0350 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10605 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2688 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026371 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05853 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1472, evm.TU.LG12.143 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g06130 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1123 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-857 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12591 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.567 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6151 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1811 |
| Salicaceae | Populus euphratica | 1 | populus_peu23707 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614783 |
| Solanaceae | Solanum chilense | 1 | SOLCI003337200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004974 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16223 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0216 |