Basic Information
Locus ID:
nbisL1-mrna-10575
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002113F_pilon | 519029 | 520141 | - | nbisL1-mrna-10575 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 41,328.97 Da | 57.91 | 78.00 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 143 | 186 | 5.3548E-17 | - |
| Pfam | PF13639 | Ring finger domain | 143 | 186 | 9.5E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 125 | 196 | 7.83E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 192 | 1.5E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 144 | 185 | 2.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 144 | 186 | 12.858103 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024456416.1 | E3 ubiquitin-protein ligase Os04g0590900 [Populus trichocarpa] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T2ZW09 | RING-type E3 ubiquitin transferase OS=Populus deltoides OX=3696 GN=H0E87_002510 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology