Basic Information
Locus ID:
nbisL1-mrna-10569
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002113F_pilon | 485233 | 486428 | - | nbisL1-mrna-10569 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 42,252.64 Da | 35.10 | 90.41 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 217 | 251 | 0.005 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 83 | 119 | 2.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 257 | 291 | 0.002 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 80 | 381 | 8.7E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 73 | 211 | 1.9E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 212 | 389 | 1.1E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 167 | 204 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 80 | 119 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 298 | 339 | 48.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 292 | 3.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 252 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 379 | 17.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 222 | 261 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 87 | 119 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 87 | 128 | 13.181907 | IPR001680 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 33 | 5.0 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 222 | 254 | 8.861059 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 239 | 253 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 239 | 253 | 6.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 279 | 293 | 6.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 106 | 120 | 6.3E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_042970760.1 | zinc finger CCCH domain-containing protein 48-like [Carya illinoinensis] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T1R1Z5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology